We had our first EMR's to OMOP technical meeting today with colleagues from Queensland and NSW.
We had demonstration of the OMOP ETL tool https://www.omop.link and a demonstration of Atlas.
Monday, June 28, 2021
Wednesday, June 16, 2021
Extract, Transform, Load Framework for the Conversion of Health Databases to OMOP
Congratulations to our colleagues in UNSW on the publication of their paper on conversion methods for OMOP.
"Extract, Transform, Load Framework for the Conversion of Health Databases to OMOP"
Link:
https://www.medrxiv.org/content/10.1101/2021.04.08.21255178v2
EMR's to OMOP Progress
We are advancing work with two centres in Victoria and Queensland. Atlas is being set up in each centre with Synthetic CDM data to get researchers familiar with the structure of OMOP. All those R skills are going to come in handy!
https://www.ohdsi.org/atlas-a-unified-interface-for-the-ohdsi-tools/
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The University of Melbourne and The University of Queensland have signed an agreement to work on the conversion Queensland Health Cerner d...
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This is good overview of CDM with some practical hints. https://www.youtube.com/watch?v=wVtEH7QXyvk&t=2135s ...
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EMR's to OMOP is ARDC funded project that runs from 2021 - 2023. https://ardc.edu.au/project/electronic-medical-records-as-a-national-d...
