This is good overview of CDM with some practical hints.
https://www.youtube.com/watch?v=wVtEH7QXyvk&t=2135s
Tuesday, February 22, 2022
Clair Blacketer: CDM 5.4 Workshop Part 1
Tuesday, February 8, 2022
Clair Blacketer OMOP ETL tips and tricks
Clair Blacketer gives a great overview of practical aspects of the OHDSI ETL process here:
https://www.youtube.com/watch?v=wVtEH7QXyvk&t=3670s
Clair Blacketer, Manager, Epidemiology Analytics, Janssen Research & Development\
Wednesday, November 17, 2021
The University of Queensland OMOP Dataset
The University of Melbourne and The University of Queensland have signed an agreement to work on the conversion Queensland Health Cerner data to the OMOP common data model. Analysts are currently working on establishing a pilot extract load transform process (ETL) with synthetic Cerner data.
A community of practice is also being established to share expertise and support EMR conversions in other states.
Sunday, August 1, 2021
Steering committee
We had our first steering committee meeting on the 14th July. Industry representation was high on the agenda. A co-chair was proposed and we had nominations of Nicole Pratt and David Bunker. A decision will be confirmed at the next steering committee meeting.
Monday, June 28, 2021
Technical Meetings
We had our first EMR's to OMOP technical meeting today with colleagues from Queensland and NSW.
We had demonstration of the OMOP ETL tool https://www.omop.link and a demonstration of Atlas.
Wednesday, June 16, 2021
Extract, Transform, Load Framework for the Conversion of Health Databases to OMOP
Congratulations to our colleagues in UNSW on the publication of their paper on conversion methods for OMOP.
"Extract, Transform, Load Framework for the Conversion of Health Databases to OMOP"
Link:
https://www.medrxiv.org/content/10.1101/2021.04.08.21255178v2
EMR's to OMOP Progress
We are advancing work with two centres in Victoria and Queensland. Atlas is being set up in each centre with Synthetic CDM data to get researchers familiar with the structure of OMOP. All those R skills are going to come in handy!
https://www.ohdsi.org/atlas-a-unified-interface-for-the-ohdsi-tools/
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The University of Melbourne and The University of Queensland have signed an agreement to work on the conversion Queensland Health Cerner d...
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It's been a busy week on the EMR's to OMOP project. On Tuesday we had a workshop with ARDC to discuss sharing EMR to OMOP mappings i... -
EMR's to OMOP is ARDC funded project that runs from 2021 - 2023. https://ardc.edu.au/project/electronic-medical-records-as-a-national-d...
